VRSified Variants
Variant Response in GA4GH Variant Representation Standard (VRS) Format
The variant format served through the API has now changed to a format commpatible with the GA4GH Variant Representation Standard (VRS version (bleeding edge version...).
json
{
"caseLevelData": [
{
"analysisId": "pgxcs-kftwfurn",
"biosampleId": "pgxbs-kftvj7rz",
"id": "pgxvar-5c86664409d374f2dc4eeb93"
}
],
"variation": {
"location": {
"interval": {
"end": {
"type": "Number",
"value": 62947165
},
"start": {
"type": "Number",
"value": 23029501
}
},
"sequenceId": "refseq:NC_000018.10",
"type": "SequenceLocation"
},
"relativeCopyClass": "partial loss",
"updated": "2022-03-29T15:06:46.526020",
"variantInternalId": "18:23029501-62947165:DEL"
}
}
json
{
"caseLevelData": [
{
"analysisId": "pgxcs-kftwfurn",
"biosampleId": "pgxbs-kftvj7rz",
"id": "pgxvar-5c86664409d374f2dc4eeb93"
}
],
"variantInternalId": "18:23029501-62947165:DEL"
"referenceName": "18",
"start": 23029501,
"end": 62947165,
"variantType": "DEL",
"updated": "2022-03-29T15:06:46.526020"
}
json
{
"caseLevelData": [
{
"analysisId": "pgxcs-kl8hg4ky",
"biosampleId": "pgxbs-kl8hg4ku",
"id": "pgxvar-5be1840772798347f0eda0d8"
}
],
"variation": {
"location": {
"interval": {
"end": {
"type": "Number",
"value": 7577121
},
"start": {
"type": "Number",
"value": 7577120
},
"type": "SequenceInterval"
},
"sequenceId": "refseq:NC_000017.11",
"type": "SequenceLocation"
},
"state": {
"sequence": "G",
"type": "LiteralSequenceExpression"
},
"updated": "2022-03-29T15:35:35.700954",
"variantInternalId": "17:7577121:C>G"
}
}
json
{
"caseLevelData": [
{
"analysisId": "pgxcs-kl8hg4ky",
"biosampleId": "pgxbs-kl8hg4ku",
"id": "pgxvar-5be1840772798347f0eda0d8"
}
],
"variantInternalId": "17:7577121:C>G",
"start": 7577120,
"end": 7577121,
"referenceName": "17",
"referenceBases": "C",
"alternateBases": "G",
"updated": "2022-03-29T15:35:35.700954"
}