CURIE Prefix Remapping - NCIT & PMID


Wherever possible, data annotation in Progenetix uses {S}[B] OntologyClass objects for categorical values, with CURIEs as id values. So far, the Progenetix databases had used pubmed: for PubMed identifiers and ncit: for NCI Metathesaurus (Neoplasm) ids.

In line with the use in Monarch and other reference ontology based projects, we have switched the identifier formats:

  • ncit:C12345 => NCIT:C12345
  • pubmed:1234567 => PMID:1234567

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