Progenetix Data Review

This is a tracker for datasets which should be reviewed / flagged / re-processed or added to Progenetix in the first place. Please check & comment when done.

Large bias towards deletions. Is (probably) from cDNA arrays (since Pollack/Stanford)? Baseline/threshold correction?

This mostly looks like noise?

The samples are highly skewed towards deletion...

  • 2021-09-07 PMID:23417712

  • highly noisy/spiky

  • AFAIK was from methylation arrays & kept for DIPG project?
  • review / discard / select samples?