Progenetix Data Review

This is a tracker for datasets which should be reviewed / flagged / re-processed or added to Progenetix in the first place. Please check & comment when done.

• 2022-10-03: pubmed:19383354

Large bias towards deletions. Is (probably) from cDNA arrays (since Pollack/Stanford)? Baseline/threshold correction?

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• 2022-05-27: pubmed:27257180

This mostly looks like noise?

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• 2022-04-04 pgx:icdom-84421

The samples are highly skewed towards deletion...

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• 2022-01-19 pubmed:24454681

• noisy

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• 2022-01-18 geo:GSE58579

• very biased towards deletion

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• 2022-01-18 pubmed:23583283

• noisy and biased to deletion

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• 2021-10-29 pubmed:22962301

• baseline shifted towards deletions

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• 2021-09-07 pubmed:23417712

• highly noisy/spiky

• AFAIK was from methylation arrays & kept for DIPG project?
• review / discard / select samples?

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